Crate ferritin_plms 

ferritin-plms

cargo run --example amplify
cargo run --example amplify --features metal

Re-exports

pub use amplify::amplify::AMPLIFY;

pub use amplify::amplify::AmplifyOutput;

pub use amplify::amplify_runner::AmplifyModels;

pub use amplify::amplify_runner::AmplifyRunner;

pub use amplify::config::AMPLIFYConfig;

pub use esm2::esm2::ESM2;

pub use esm2::esm2::ESM2Config;

pub use esm2::esm2_runner::ESM2Models;

pub use esm2::esm2_runner::ESM2Runner;

pub use esm3::models::esm3::ESM3Config;

pub use esm3::pretrained::ESM3Models;

pub use esm3::pretrained::ESM3Runner;

pub use esmc::models::esmc::ESMC;

pub use esmc::models::esmc::ESMCConfig;

pub use esmc::models::esmc::ESMCOutput;

pub use esmc::models::esmc::LogitsConfig;

pub use esmc::models::esmc::LogitsOutput;

pub use esmc::pretrained::ESMCModels;

pub use esmc::pretrained::ESMCRunner;

pub use esmfold2::config::ESMFold2Config;

pub use esmfold2::output::ESMFold2Output;

pub use esmfold2::pretrained::ESMFold2Models;

pub use esmfold2::pretrained::ESMFold2Runner;

pub use esmfold2::ChainInput;

pub use esmfold2::DNAInput;

pub use esmfold2::LigandInput;

pub use esmfold2::Modification;

pub use esmfold2::ProteinInput;

pub use esmfold2::StructurePredictionInput;

pub use featurize::StructureFeatures;

pub use ligandmpnn::configs::ProteinMPNNConfig;

pub use ligandmpnn::model::ProteinMPNN;

pub use ligandmpnn::pmpnn_runner::ProteinMPNNModels;

pub use ligandmpnn::pmpnn_runner::ProteinMPNNRunner;

pub use plm_runner::PlmRunner;

Modules

amplify

AMPLIFY

esm2

ESM-2 protein language model from Facebook/Meta Research.

esm3

ESM-3 multimodal protein language model from EvolutionaryScale.

esmc

ESM-C / ESM-3 model family from EvolutionaryScale.

esmfold2

ESMFold2 structure-prediction model.

featurize

Protein Featurizer for ProteinMPNN/LignadMPNN

ligandmpnn

ferritin-ligandmpnn

plm_runner

Unified trait for protein language model runners.

types

Types for Standardizing Outputs for Viz

utils

Functions

device

Returns the best available device for computation.