Module featurize

Protein Featurizer for ProteinMPNN/LignadMPNN

Extract protein features for ligandmpnn

Returns a set of features calculated from protein structure including:

• Residue-level features like amino acid type, secondary structure
• Geometric features like distances, angles
• Chemical features like hydrophobicity, charge
• Evolutionary features from MSA profiles

Modules

utilities

Traits

StructureFeatures

. Trait defining Protein->Tensor utilities useful for Machine Learning