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StructureEncoderRunner

ferritin_plms::esm3::pretrained

Struct StructureEncoderRunner 

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pub struct StructureEncoderRunner { /* private fields */ }
Expand description

Wraps the ESM3 structure token encoder for converting backbone coordinates to tokens.

Uses a separate checkpoint (esm3_structure_encoder_v0.pth) from the main model.

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impl StructureEncoderRunner

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pub fn from_pretrained(device: Device) -> Result<Self>

Download and load the structure encoder from HuggingFace.

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pub fn encode(&self, coords: &Tensor) -> Result<Tensor>

Encode backbone coordinates to structure tokens.

  • coords: (B, L, 3, 3) backbone (N, CA, C) atom positions.

Returns (B, L) u32 structure token indices.

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