Module model 

Model layer (Layer 1): atomic hierarchy, conformation, and bond connectivity.

This module provides the core data structures for representing molecular structures. It sits on top of the Layer 0 primitives in crate::data.

Architecture

Model  ──── Arc<AtomicHierarchy>  (topology: atoms, residues, chains, bonds)
       └─── AtomicConformation    (coordinates: x, y, z per atom)

Multiple Models (trajectory frames) share one AtomicHierarchy via Arc.

Re-exports

pub use bonds::Bonds;

pub use conformation::AtomicConformation;

pub use hierarchy::AtomicHierarchy;

pub use model::Model;

pub use tables::AtomsTable;

pub use tables::ChainsTable;

pub use tables::ResidueGroup;

pub use tables::ResiduesTable;

Modules

bonds

Bond connectivity stored in struct-of-arrays (SoA) layout with CSR indexing.

conformation

Per-model coordinate data that varies across trajectory frames.

hierarchy

Atomic hierarchy: topology layer shared across trajectory frames.

model

The Model struct: one frame of a (possibly multi-frame) structure.

tables

Table structs for per-atom, per-residue, and per-chain data.