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Module hierarchy

Module hierarchy 

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Atomic hierarchy: topology layer shared across trajectory frames.

AtomicHierarchy holds all structural data that does not change between trajectory frames (connectivity, sequence, chain/residue assignments). It is wrapped in std::sync::Arc so multiple super::model::Models (frames) can share a single topology without cloning.

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AtomicHierarchy
Topology layer: all structural data that is constant across trajectory frames.